{ "_id": "6ae37f1c8d250e7ad09f0ae6", "Package": "cellspecR", "Title": "Read, Validate and Store Multiplexed Imaging Cell Tables", "Version": "1.1.0", "Authors@R": "person(\"R.\", \"Heller\",\nemail = \"raban.heller@uni-ulm.de\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8006-9742\"))", "Description": "Defines 'cellspec', a versioned table format for segmented\ncells from multiplexed tissue images: cell identifiers,\ncentroids in micrometres, per-marker measurements with an\nexplicit compartment and statistic, image and channel metadata,\nand provenance. Reads measurement exports of image-analysis\ntools such as 'QuPath' and 'MCMICRO' into this format,\nvalidates its structure and content, selects one signal per\nmarker through an explicit policy, and writes directories with\na 'SHA-256' checksum manifest so that later analysis steps can\nverify what they read. 'QuPath' is described by Bankhead et al.\n(2017) and 'MCMICRO' by\nSchapiro et al. 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