{ "_id": "6aea24119ceaa78f2009deae", "Package": "dynasimR", "Type": "Package", "Title": "Dynamic Agent-Node Simulation Analysis", "Version": "0.1.1", "Authors@R": "c(\nperson(\ngiven = \"R.\",\nfamily = \"Heller\",\nrole = c(\"aut\", \"cre\"),\nemail = \"r-heller@example.org\"\n)\n)", "Description": "A domain-neutral framework for analysis and visualisation\nof discrete-event, agent-based and node-actor simulation\noutputs. Designed as a general-purpose toolkit for systems in\nwhich entities (actors, nodes, agents) move through states and\ninteract within spatial or network environments. Supports two\noutput schemas (Profile A and Profile B) through a common\nloader and profile-specific analysis functions. Includes an\ninteractive Shiny dashboard and publication-ready export\nhelpers.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "xz", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "URL": "https://github.com/cttir/dynasimR,\nhttps://cttir.github.io/dynasimR/", "BugReports": "https://github.com/cttir/dynasimR/issues", "Config/testthat/edition": "3", "Language": "en-GB", "Config/Needs/website": "CTTIR/themakR", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libicu-dev libx11-dev", "Repository": "https://cttir.r-universe.dev", "Date/Publication": "2026-11-03 11:17:49 UTC", "RemoteUrl": "https://github.com/CTTIR/dynasimR", "RemoteRef": "HEAD", "RemoteSha": "844116be095d1b873d73ce307a40c406491d479a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-03 18:08:17 UTC", "User": "root" }, "Author": "R. Heller [aut, cre]", "Maintainer": "R. Heller ", "_user": "cttir", "_type": "src", "_file": "dynasimR_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/27465be71e9ee7112d946e23c4657ff3ae2c35695d036971de18e7271b82e146", "_filesize": 2047010, "_sha256": "27465be71e9ee7112d946e23c4657ff3ae2c35695d036971de18e7271b82e146", "_expires": "2027-02-11T18:12:31.000Z", "_created": "2026-11-03T18:08:17.000Z", "_published": "2026-11-03T18:12:33.238Z", "_upstream": "https://github.com/CTTIR/dynasimR", "_status": "success", "_maintainer": { "name": "R. Heller", "email": "r-heller@example.org" }, "_jobs": [ { "job": 126109140190, "time": 178, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13256203528" }, { "job": 126109140202, "time": 190, "config": "linux-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13257428328" }, { "job": 126109140170, "time": 135, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "13257443102" }, { "job": 126109140380, "time": 133, "config": "macos-release-arm64", "r": "4.6.2", "check": "OK", "artifact": "13255509140" }, { "job": 126106646036, "time": 268, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13257522505" }, { "job": 126109140120, "time": 149, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13257772467" }, { "job": 126109140188, "time": 190, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13256213515" }, { "job": 126109140183, "time": 175, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "13255778861" }, { "job": 126109140348, "time": 157, "config": "windows-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13257268632" } ], "_buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658", "_commit": { "id": "844116be095d1b873d73ce307a40c406491d479a", "author": "R. Heller <58561665+r-heller@users.noreply.github.com>", "committer": "R. Heller <58561665+r-heller@users.noreply.github.com>", "message": "Validate figure device output and preserve previous exports\n", "time": 1793704669 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "dplyr", "version": ">= 1.1.0", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.3.0", "role": "Imports" }, { "package": "purrr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "readr", "version": ">= 2.1.0", "role": "Imports" }, { "package": "tibble", "version": ">= 3.2.0", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.4.0", "role": "Imports" }, { "package": "survival", "version": ">= 3.5.0", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.0", "role": "Imports" }, { "package": "cli", "version": ">= 3.6.0", "role": "Imports" }, { "package": "glue", "version": ">= 1.6.0", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "shiny", "version": ">= 1.7.0", "role": "Suggests" }, { "package": "shinydashboard", "version": ">= 0.7.0", "role": "Suggests" }, { "package": "shinyWidgets", "version": ">= 0.7.0", "role": "Suggests" }, { "package": "plotly", "version": ">= 4.10.0", "role": "Suggests" }, { "package": "DT", "version": ">= 0.28", "role": "Suggests" }, { "package": "fresh", "version": ">= 0.2.0", "role": "Suggests" }, { "package": "survminer", "version": ">= 0.4.9", "role": "Suggests" }, { "package": "broom", "version": ">= 1.0.0", "role": "Suggests" }, { "package": "xtable", "version": ">= 1.8.0", "role": "Suggests" }, { "package": "kableExtra", "version": ">= 1.3.0", "role": "Suggests" }, { "package": "viridis", "version": ">= 0.6.0", "role": "Suggests" }, { "package": "scales", "version": ">= 1.2.0", "role": "Suggests" }, { "package": "patchwork", "version": ">= 1.1.0", "role": "Suggests" }, { "package": "boot", "role": "Suggests" }, { "package": "yaml", "role": "Suggests" }, { "package": "nnet", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "cttir", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-19", "n": 1 }, { "week": "2026-24", "n": 4 }, { "week": "2026-26", "n": 3 }, { "week": "2026-33", "n": 1 }, { "week": "2026-34", "n": 1 }, { "week": "2026-42", "n": 4 }, { "week": "2026-43", "n": 3 }, { "week": "2026-44", "n": 3 }, { "week": "2026-45", "n": 4 } ], "_tags": [ { "name": "v0.1.0", "date": "2026-05-04" } ], "_stars": 0, "_contributors": [ { "user": "r-heller", "count": 25, "uuid": 58561665 } ], "_userbio": { "uuid": 275040041, "type": "organization", "name": "CTTIR", "followers": 10, "description": "Computational Trauma and Tissue Injury Research" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dynasimR" }, "_devurl": "https://github.com/cttir/dynasimr", "_pkgdown": "https://cttir.github.io/dynasimR/", "_searchresults": 10, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/dynasimR.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "al_efficiency", "check_app_dependencies", "compute_completion_analysis", "compute_compliance_index", "compute_wait_gap_index", "cox_model", "detect_bottlenecks", "dynasimR_colors", "export_figure", "export_latex_table", "fill_placeholders", "group_effect", "km_estimate", "launch_app", "load_example_data", "morris_screening", "plot_al_tradeoff", "plot_cost_effectiveness", "plot_forest", "plot_km", "plot_map", "plot_policy", "plot_progress_curves", "plot_radar", "plot_scenario_heatmap", "plot_sdi_map", "plot_timeline", "policy_effect", "progress_trajectory", "read_simulation", "resource_comparison", "scale_color_group_dynasimR", "scale_color_policy_dynasimR", "scale_fill_group_dynasimR", "spatial_supply_demand", "stage_throughput", "theme_dynasimR", "tornado_data", "validate_dynasimR_data" ], "_datasets": [ { "name": "scenario_meta", "title": "Scenario metadata for Profile A and Profile B", "object": "scenario_meta", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "id", "profile", "label", "rq", "policy", "resource", "al" ], "rows": 36, "table": true, "tojson": true }, { "name": "survival_params", "title": "Example Weibull event-time parameters by priority category", "object": "survival_params", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "category", "k", "lambda", "source" ], "rows": 4, "table": true, "tojson": true } ], "_help": [ { "page": "al_efficiency", "title": "Compute AL-Efficiency ratio (event reduction vs. compliance)", "topics": [ "al_efficiency" ] }, { "page": "check_app_dependencies", "title": "Check availability of Shiny-app dependencies", "topics": [ "check_app_dependencies" ] }, { "page": "compute_completion_analysis", "title": "Completion-outcome analysis (multinomial)", "topics": [ "compute_completion_analysis" ] }, { "page": "compute_compliance_index", "title": "Compliance Index", "topics": [ "compute_compliance_index" ] }, { "page": "compute_wait_gap_index", "title": "Wait-Gap Index (Profile B)", "topics": [ "compute_wait_gap_index" ] }, { "page": "cox_model", "title": "Cox proportional-hazards model for simulation data", "topics": [ "cox_model" ] }, { "page": "detect_bottlenecks", "title": "Bottleneck detection across processing stages", "topics": [ "detect_bottlenecks" ] }, { "page": "dynasimR_colors", "title": "Colour palette for dynasimR plots", "topics": [ "dynasimR_colors" ] }, { "page": "export_figure", "title": "Export a ggplot in publication-ready format", "topics": [ "export_figure" ] }, { "page": "export_latex_table", "title": "Export a tibble as a publication-quality LaTeX table", "topics": [ "export_latex_table" ] }, { "page": "fill_placeholders", "title": "Fill [XX_*] placeholders in a LaTeX manuscript", "topics": [ "fill_placeholders" ] }, { "page": "group_effect", "title": "Between-group prioritisation effect (Profile B)", "topics": [ "group_effect" ] }, { "page": "km_estimate", "title": "Kaplan-Meier estimator for simulation data", "topics": [ "km_estimate" ] }, { "page": "launch_app", "title": "Launch the dynasimR Shiny dashboard", "topics": [ "launch_app" ] }, { "page": "load_example_data", "title": "Load the package-bundled example dataset", "topics": [ "load_example_data" ] }, { "page": "morris_screening", "title": "Standardized univariate sensitivity screening", "topics": [ "morris_screening" ] }, { "page": "plot_al_tradeoff", "title": "Autonomy-level trade-off plot: event reduction vs. compliance", "topics": [ "plot_al_tradeoff" ] }, { "page": "plot_cost_effectiveness", "title": "Descriptive cost-outcome plane and net-benefit fractions", "topics": [ "plot_cost_effectiveness" ] }, { "page": "plot_forest", "title": "Forest plot of Cox hazard ratios", "topics": [ "plot_forest" ] }, { "page": "plot_km", "title": "Kaplan-Meier curves", "topics": [ "plot_km" ] }, { "page": "plot_map", "title": "2D entity map snapshot", "topics": [ "plot_map" ] }, { "page": "plot_policy", "title": "Policy effect bar chart with CI whiskers", "topics": [ "plot_policy" ] }, { "page": "plot_progress_curves", "title": "Progress-score trajectory plot (Profile B)", "topics": [ "plot_progress_curves" ] }, { "page": "plot_radar", "title": "Radar chart of metrics across scenarios", "topics": [ "plot_radar" ] }, { "page": "plot_scenario_heatmap", "title": "Scenario comparison heatmap", "topics": [ "plot_scenario_heatmap" ] }, { "page": "plot_sdi_map", "title": "Supply-Demand Index choropleth", "topics": [ "plot_sdi_map" ] }, { "page": "plot_timeline", "title": "Time-series plot of a simulation metric", "topics": [ "plot_timeline" ] }, { "page": "policy_effect", "title": "Quantify policy effect (policy A vs. policy B)", "topics": [ "policy_effect" ] }, { "page": "progress_trajectory", "title": "Progress-score trajectory analysis (Profile B)", "topics": [ "progress_trajectory" ] }, { "page": "read_simulation", "title": "Load simulation outputs into the dynasimR standard format", "topics": [ "read_simulation" ] }, { "page": "resource_comparison", "title": "Compare outcomes across resource configurations", "topics": [ "resource_comparison" ] }, { "page": "scale_color_group_dynasimR", "title": "Colour scale for entity group", "topics": [ "scale_color_group_dynasimR" ] }, { "page": "scale_color_policy_dynasimR", "title": "Colour scale for policy", "topics": [ "scale_color_policy_dynasimR" ] }, { "page": "scale_fill_group_dynasimR", "title": "Fill scale for entity group", "topics": [ "scale_fill_group_dynasimR" ] }, { "page": "scenario_meta", "title": "Scenario metadata for Profile A and Profile B", "topics": [ "scenario_meta" ] }, { "page": "spatial_supply_demand", "title": "Supply-Demand Index (SDI) per region", "topics": [ "spatial_supply_demand" ] }, { "page": "stage_throughput", "title": "Stage throughput analysis", "topics": [ "stage_throughput" ] }, { "page": "survival_params", "title": "Example Weibull event-time parameters by priority category", "topics": [ "survival_params" ] }, { "page": "theme_dynasimR", "title": "ggplot2 theme for dynasimR figures", "topics": [ "theme_dynasimR" ] }, { "page": "tornado_data", "title": "Tornado-diagram data from one-at-a-time perturbation", "topics": [ "tornado_data" ] }, { "page": "validate_dynasimR_data", "title": "Validate a dynasimR_data object", "topics": [ "validate_dynasimR_data" ] } ], "_pkglogo": "https://github.com/CTTIR/dynasimR/raw/HEAD/man/figures/logo.svg", "_readme": "https://github.com/CTTIR/dynasimR/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "generics", "ggplot2", "glue", "gtable", "hms", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "RColorBrewer", "readr", "rlang", "S7", "scales", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_vignettes": [ { "source": "autonomy-tradeoff.Rmd", "filename": "autonomy-tradeoff.html", "title": "Autonomy-level trade-off (AL0-AL5)", "engine": "knitr::rmarkdown", "headings": [ "AL-Efficiency ratio", "Trade-off plot", "Interpretation" ], "created": "2026-05-04 17:53:44", "modified": "2026-11-02 15:21:19", "commits": 5 }, { "source": "entity-flow-analysis.Rmd", "filename": "entity-flow-analysis.html", "title": "Entity flow analysis", "engine": "knitr::rmarkdown", "headings": [ "Stage throughput", "Bottleneck detection", "Visualising first-service times" ], "created": "2026-05-04 17:53:44", "modified": "2026-11-02 15:21:19", "commits": 5 }, { "source": "getting-started.Rmd", "filename": "getting-started.html", "title": "Getting started with dynasimR", "engine": "knitr::rmarkdown", "headings": [ "Load data", "Time-to-event analysis", "Policy effect", "Autonomy trade-off", "Manuscript-ready export", "Launching the dashboard" ], "created": "2026-05-04 17:53:44", "modified": "2026-11-02 15:21:19", "commits": 7 }, { "source": "manuscript-export.Rmd", "filename": "manuscript-export.html", "title": "Manuscript export workflow", "engine": "knitr::rmarkdown", "headings": [ "1. LaTeX tables", "2. Figures at publication dimensions", "3. Placeholder substitution in the .tex body", "Complete placeholder list" ], "created": "2026-05-04 17:53:44", "modified": "2026-11-03 11:17:49", "commits": 6 }, { "source": "policy-effects.Rmd", "filename": "policy-effects.html", "title": "Policy effects: Policy A vs. Policy B", "engine": "knitr::rmarkdown", "headings": [ "The core comparison", "Delta event-rate visualisation", "Auto-generated narrative", "Effect sizes" ], "created": "2026-05-04 17:53:44", "modified": "2026-11-02 15:21:19", "commits": 5 } ], "_score": 4.352182518111363, "_indexed": true, "_nocasepkg": "dynasimr", "_universes": [ "cttir" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-11-03T18:10:57.000Z", "distro": "resolute", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/b97cb62003ced39c8078617bf8d12e4f0395a50ff4543208b2d05dac1783b625", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.6.2", "os": "linux", "version": "0.1.1", "date": "2026-11-03T18:11:04.000Z", "distro": "resolute", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/6d9e216f948f5e5ad8f34550db26b8148861827aa4d1e5e91236f56773972355", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-11-03T18:10:09.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/1c7e40091f282a72df9dd0c61670be49c7b1ae83bd96f6e81f3de9bb7b97ad0f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.6.2", "os": "mac", "version": "0.1.1", "date": "2026-11-03T18:10:13.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/b20d42a63be41885a996f16c8f5abb2716c32db0352e1d6f3c8a7b1ef9e96c25", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-11-03T18:11:10.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/789d9e44fe4e2fb8e0e37e131d809683432cd091e17a3e7ad9e53aab229f753e", "status": "success", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-11-03T18:10:14.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/87b42af1ea63216f846ec955954dafd3319c105002c5c24f6edfd3897bcdd5b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-11-03T18:10:04.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/2c137ff27bfd29f97fd15356a8bdf5eec8795654f660c671e980d3dfc6522bbf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" }, { "r": "4.6.2", "os": "win", "version": "0.1.1", "date": "2026-11-03T18:09:53.000Z", "commit": "844116be095d1b873d73ce307a40c406491d479a", "fileid": "https://r2.ropensci.org/ef32ba0ba2d7aed8ef754a6e609277f175ced6497898d6c135a5a300970f9387", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41690177658" } ] }