{ "_id": "6aea2597818c9e3ef6dbff0c", "Package": "phenoloom", "Type": "Package", "Title": "CTTIR Spatial Biology Suite", "Version": "0.1.2", "Authors@R": "person(\"R.\", \"Heller\", email = \"raban.heller@charite.de\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8006-9742\"))", "Description": "An installation framework for the CTTIR spatial biology\nsuite. Declares 'segmantR', 'cellspecR', 'gatekeepR', and\n'phenoscapR' as required dependencies so that standard package\ninstallation installs the suite and its required dependencies.\nAnalysis functionality remains in the member packages; no\nadditional functions or automatic attachment are provided.", "License": "MIT + file LICENSE", "URL": "https://github.com/CTTIR/phenoloom,\nhttps://cttir.r-universe.dev/phenoloom", "BugReports": "https://github.com/CTTIR/phenoloom/issues", "Remotes": [ "CTTIR/segmantR", "CTTIR/cellspecR", "CTTIR/gatekeepR", "CTTIR/phenoscapR" ], "Additional_repositories": "https://cttir.r-universe.dev", "Encoding": "UTF-8", "Language": "en-US", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake libpng-dev libuv1-dev libssl-dev libproj-dev python3\nlibsqlite3-dev libudunits2-dev zlib1g-dev", "Repository": "https://cttir.r-universe.dev", "Date/Publication": "2026-11-03 13:13:28 UTC", "RemoteUrl": "https://github.com/CTTIR/phenoloom", "RemoteRef": "HEAD", "RemoteSha": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-03 18:14:47 UTC", "User": "root" }, "Author": "R. Heller [aut, cre, cph] (ORCID:\n)", "Maintainer": "R. Heller ", "_user": "cttir", "_type": "src", "_file": "phenoloom_0.1.2.tar.gz", "_fileid": "https://r2.ropensci.org/ad95b573aa95be2c1a911afc717b3fd0add23dedecb51195d0b5defda10a79dc", "_filesize": 1874738, "_sha256": "ad95b573aa95be2c1a911afc717b3fd0add23dedecb51195d0b5defda10a79dc", "_expires": "2027-02-11T18:19:01.000Z", "_created": "2026-11-03T18:14:47.000Z", "_published": "2026-11-03T18:19:03.103Z", "_upstream": "https://github.com/CTTIR/phenoloom", "_status": "success", "_maintainer": { "name": "R. Heller", "email": "raban.heller@charite.de", "login": "r-heller", "orcid": "0000-0001-8006-9742", "description": "Doctoral researcher at Charité Universitätsmedizin Berlin, Germany. Focus on biomedical research, biostatistics, and data science.", "uuid": 58561665 }, "_jobs": [ { "job": 126112638759, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13257374526" }, { "job": 126112638422, "time": 214, "config": "linux-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13256624491" }, { "job": 126112638614, "time": 162, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "13256109513" }, { "job": 126112638668, "time": 159, "config": "macos-release-arm64", "r": "4.6.2", "check": "OK", "artifact": "13257554029" }, { "job": 126110280925, "time": 252, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13256448846" }, { "job": 126112638298, "time": 184, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13258035822" }, { "job": 126112638683, "time": 162, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13256154489" }, { "job": 126112638857, "time": 148, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "13256379364" }, { "job": 126112638687, "time": 147, "config": "windows-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13255979564" } ], "_buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777", "_commit": { "id": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "author": "R. Heller <58561665+r-heller@users.noreply.github.com>", "committer": "R. Heller <58561665+r-heller@users.noreply.github.com>", "message": "Verify installed spatial suite and document reproducible setup\n", "time": 1793711608 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "segmantR", "role": "Imports" }, { "package": "cellspecR", "role": "Imports" }, { "package": "gatekeepR", "role": "Imports" }, { "package": "phenoscapR", "role": "Imports" } ], "_owner": "cttir", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-43", "n": 5 }, { "week": "2026-44", "n": 1 }, { "week": "2026-45", "n": 2 } ], "_tags": [], "_topics": [ "spatial-biology", "multiplexed-imaging", "cell-segmentation", "phenotyping", "installation" ], "_stars": 0, "_contributors": [ { "user": "r-heller", "count": 8, "uuid": 58561665 } ], "_userbio": { "uuid": 275040041, "type": "organization", "name": "CTTIR", "followers": 10, "description": "Computational Trauma and Tissue Injury Research" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phenoloom" }, "_devurl": "https://github.com/cttir/phenoloom", "_searchresults": 0, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/phenoloom.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_help": [ { "page": "phenoloom-package", "title": "CTTIR Spatial Biology Suite", "topics": [ "phenoloom-package", "phenoloom" ] } ], "_pkglogo": "https://github.com/CTTIR/phenoloom/raw/HEAD/man/figures/logo.svg", "_readme": "https://github.com/CTTIR/phenoloom/raw/HEAD/README.md", "_rundeps": [ "cellspecR", "cli", "data.table", "digest", "fs", "gatekeepR", "jsonlite", "nanoparquet", "phenoscapR", "rlang", "segmantR" ], "_score": 2.1760912590556813, "_indexed": true, "_nocasepkg": "phenoloom", "_universes": [ "cttir", "r-heller" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-11-03T18:17:55.000Z", "distro": "resolute", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/4dc90c540b060a6c0689fa3f5e73b9b3fba2b0abc00bb8dbed8cf3d1d7b7f5ce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.6.2", "os": "linux", "version": "0.1.2", "date": "2026-11-03T18:18:30.000Z", "distro": "resolute", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/ece49641e971a7442fac2afbe47f7ff52c2f551fcebd645496d114be7a283779", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-11-03T18:17:39.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/ecc0dd5557c18769e49d5cab32ae906dfbf49e68dcd50c474cfdb2fbec8505e5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.6.2", "os": "mac", "version": "0.1.2", "date": "2026-11-03T18:17:36.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/cec08ca1395f9bb03809c862219343ab55380755695141a9ce71091c8b2c7925", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-11-03T18:18:06.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/5048fdbb539c932c6aa57937378382637953419a97967a086cc3de49ddc590f0", "status": "success", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-11-03T18:17:39.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/151b0ea3879c9d166720a5a4a29509bfcd985fc7946b1a073f9a9658305842bd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-11-03T18:17:25.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/6d36efe85f3e24b95d94fff826528c7bba1613caf415ff99aafef16fdcf916d8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" }, { "r": "4.6.2", "os": "win", "version": "0.1.2", "date": "2026-11-03T18:17:24.000Z", "commit": "b44b6a857d363f4f70317eeb6e8bdf5fa12fbe4b", "fileid": "https://r2.ropensci.org/5497fe7ed19e43e50577c3bc68c91e5cb4928cc66c3e03efe23140aef3433dba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cttir/actions/runs/41691222777" } ] }