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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "molpathR" in publications use:'
type: software
license: MIT
title: 'molpathR: Molecular Pathology Data Platform for Clinical NGS Integration'
version: 0.1.0.9001
abstract: A unified platform for ingesting, linking, querying, and visualizing molecular
  pathology data from heterogeneous sources including NGS files (FASTQ, BAM, VCF),
  XML variant interpretation reports, structured pathology PDF reports, pathology
  and clinical information systems, and survival outcome data. Provides a searchable
  in-memory database and an interactive Shiny application for clinical exploration
  and cohort analysis. Raw sequence and alignment readers do not perform variant calling
  or clinical interpretation.
authors:
- family-names: Heller
  given-names: R.
  email: raban.heller@charite.de
  orcid: https://orcid.org/0000-0001-8006-9742
preferred-citation:
  type: manual
  title: 'molpathR: Molecular Pathology Data Platform for Clinical NGS Integration'
  authors:
  - family-names: Heller
    given-names: R.
    orcid: https://orcid.org/0000-0001-8006-9742
    email: raban.heller@charite.de
  year: '2026'
  notes: Development source version 0.1.0.9001
  url: https://github.com/CTTIR/molpathR
repository: https://cttir.r-universe.dev
repository-code: https://github.com/cttir/molpathR
commit: 133e5ecc539f3ca84e84274bbed615228c6f9d6f
url: https://cttir.github.io/molpathR/
date-released: '2026-11-03'
contact:
- family-names: Heller
  given-names: R.
  email: raban.heller@charite.de
  orcid: https://orcid.org/0000-0001-8006-9742