Package: bloodspottR 0.1.0.9000

R. Heller

bloodspottR: Calibrated Histology Burden and Erythrocyte Profile Analysis

Tools for physically calibrated histology burden summaries, explicit measurement-area accounting, and tissue-aware spatial analysis. Supports reproducible development of red-chromogen and erythrocyte-profile workflows. Image-derived candidates require independent validation before biological interpretation.

Authors:R. Heller [aut, cre]

bloodspottR_0.1.0.9000.tar.gz
bloodspottR_0.1.0.9000.zip(r-4.7-any)bloodspottR_0.1.0.9000.zip(r-4.6-any)bloodspottR_0.1.0.9000.zip(r-4.5-any)
bloodspottR_0.1.0.9000.tgz(r-4.6-any)bloodspottR_0.1.0.9000.tgz(r-4.5-any)
bloodspottR_0.1.0.9000.tar.gz(r-4.7-any)bloodspottR_0.1.0.9000.tar.gz(r-4.6-any)
bloodspottR_0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bloodspottR/json (API)

# Install 'bloodspottR' in R:
install.packages('bloodspottR', repos = c('https://cttir.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cttir/bloodspottr/issues

On CRAN:

Conda:

4.00 score 27 exports 3 dependencies

Last updated from:a8cfcd2052. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK194
source / vignettesOK247
linux-releaseOK174
macos-releaseOK107
macos-oldrelOK125
windows-develOK119
windows-releaseOK108
windows-oldrelOK84
wasm-releaseOK116

Exports:aggregate_burdenaggregate_event_burdenbs_analyzebs_appbs_as_cellspecbs_backendbs_color_featuresbs_comparebs_cttir_inventorybs_examplebs_export_resultsbs_import_legacybs_profile_extentbs_projectbs_reportbs_review_confirmbs_review_planbs_run_backendbs_statusbs_summarizebs_trainbs_validatebs_viewer_examplecell_patternmeasure_burdenmeasure_event_burdentissue_window

Dependencies:clidigestjsonlite

Saved reviews and reproducible external workers
Freeze the review pool | Save in the annotation client, then confirm | External worker protocol
Rendered fromreview-and-backends.Rmdusingknitr::rmarkdown

Last update: 2026-10-30
Started: 2026-09-21

Explore slide results with Shiny
Start a local explorer | Browse annotated slides | Open native whole-slide images | Customize and watch saved results | Prepare an upload | Interpret the four cards | Navigate the results | Scientific and hosting boundaries
Rendered fromshiny-results-explorer.Rmdusingknitr::rmarkdown

Last update: 2026-10-28
Started: 2026-09-21

From slide measurements to a traceable report
Scope and measurement meaning | Pool numerators and support | Import a preserved measurement table | Compare runs on declared common support | Preserve a report and tables | Explore with Shiny
Rendered frombloodspottr-workflow.Rmdusingknitr::rmarkdown

Last update: 2026-10-28
Started: 2026-09-21

Scoped interoperability across the CTTIR suite
Reuse without hidden execution | Calibrated event exchange with cellspecR | Compatibility boundaries
Rendered fromcttir-interoperability.Rmdusingknitr::rmarkdown

Last update: 2026-10-28
Started: 2026-09-21

Readme and manuals

Help Manual

Help pageTopics
Aggregate disjoint measurements using summed areas and countsaggregate_burden
Aggregate event counts and relative positive area by slideaggregate_event_burden
Analyze using a configured workerbs_analyze
Explore slide results in a local Shiny applicationbs_app
Exchange calibrated event candidates through cellspecRbs_as_cellspec
Configure an external analysis workerbs_backend
Extract the study's three relative optical-density color featuresbs_color_features
Compare two runs with explicit support checksbs_compare
Inspect a local CTTIR source suite without loading itbs_cttir_inventory
Deterministic demonstration resultsbs_example
Export a frozen set of result tablesbs_export_results
Import preserved result tables without changing source filesbs_import_legacy
Compare a calibrated profile's diameter with an explicit referencebs_profile_extent
Create or open a portable analysis projectbs_project
Render a portable HTML results reportbs_report
Confirm an explicitly reviewed, saved annotation exportbs_review_confirm
Freeze a bounded image-review queuebs_review_plan
Run a validated external worker transactionbs_run_backend
Inspect analysis state without launching workersbs_status
Pool physical-slide measurements by declared groupsbs_summarize
Train using a configured workerbs_train
Validate project or physical-slide measurement contractsbs_validate
Create a synthetic annotated-slide viewer examplebs_viewer_example
Construct a cell point pattern inside observed tissuecell_pattern
Calculate calibrated burden from classified pixels and objectsmeasure_burden
Measure positive events and relative positive areameasure_event_burden
Convert local tissue polygons into a spatial observation windowtissue_window