Inspecting before reading | Reading a cube | Acquisition metadata | Whole recordings and archives | A note on the format | Where this fits
Package: tivis.r 0.1.0
R. Heller
tivis.r: Read Diaspective Vision TIVITA Hyperspectral Recordings
Reads hyperspectral imaging data written by the Diaspective Vision TIVITA Suite, used for intraoperative tissue and perfusion imaging. Parses the binary 'SpecCube.dat' container (big-endian float32 samples in band-interleaved-by-pixel order behind a 12-byte dimension header), the German-language acquisition metadata log, and the parameter images the Suite exports alongside each recording (oxygenation, NIR perfusion, tissue haemoglobin and water indices). Requires no vendor SDK and contains no compiled code. Companion to 'cuvis.r', which covers Cubert snapshot cameras, and a data source for 'hyperspectR'.
Authors:
tivis.r_0.1.0.tar.gz
tivis.r_0.1.0.zip(r-4.7-any)tivis.r_0.1.0.zip(r-4.6-any)tivis.r_0.1.0.zip(r-4.5-any)
tivis.r_0.1.0.tgz(r-4.6-any)tivis.r_0.1.0.tgz(r-4.5-any)
tivis.r_0.1.0.tar.gz(r-4.7-any)tivis.r_0.1.0.tar.gz(r-4.6-any)
tivis.r_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tivis.r/json (API)
| # Install 'tivis.r' in R: |
| install.packages('tivis.r', repos = c('https://cttir.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cttir/tivis.r/issues
Pkgdown/docs site:https://cttir.github.io
Last updated from:39383e4e03. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 125 | ||
| source / vignettes | OK | 159 | ||
| linux-release | OK | 99 | ||
| macos-release | OK | 166 | ||
| macos-oldrel | OK | 161 | ||
| windows-devel | OK | 73 | ||
| windows-release | OK | 67 | ||
| windows-oldrel | OK | 57 | ||
| wasm-release | OK | 114 |
Exports:tivis_availabletivis_example_filetivis_get_metadatativis_get_wavelengthstivis_list_measurementstivis_measurementtivis_parse_timestamptivis_read_cubetivis_read_headertivis_reference_images
Dependencies:cli
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Is the TIVITA Reader Available? | tivis_available |
| Path to the Bundled Example Cube | tivis_example_file |
| Read TIVITA Acquisition Metadata | tivis_get_metadata |
| TIVITA Wavelength Axis | tivis_get_wavelengths |
| Discover TIVITA Recordings Below a Directory | tivis_list_measurements |
| Read a Complete TIVITA Recording | tivis_measurement |
| Parse a TIVITA Filename Timestamp | tivis_parse_timestamp |
| Read a TIVITA Suite Hyperspectral Cube | tivis_read_cube |
| Read a TIVITA Cube Header | tivis_read_header |
| Locate the Parameter Images Beside a Recording | tivis_reference_images |