Package: mssrscopR 0.2.0.9001

R. Heller

mssrscopR: Single-Frame Mean-Shift Super-Resolution Structure Maps

Computes the single-frame Mean-Shift Super-Resolution ('MSSR') structure map of Torres-Garcia et al. (2022) <doi:10.1038/s41467-022-34693-9> with an independently written implementation that keeps the input orientation, accepts non-square frames and defines the result for flat input. Provides output-grid coordinates, structural masks for measuring the original data, pixel-wise temporal statistics of the per-frame maps of an image sequence (mean, variance and lagged SOFI cumulants as defined in the article's supplement), a self-test against bundled synthetic fixtures and an interactive 'shiny' app for exploring parameters. Results are structural maps, not quantitative intensities; no gain in physical resolution or benefit for any application is implied.

Authors:R. Heller [aut, cre, cph]

mssrscopR_0.2.0.9001.tar.gz
mssrscopR_0.2.0.9001.zip(r-4.7-x86_64)mssrscopR_0.2.0.9001.zip(r-4.7-arm64)mssrscopR_0.2.0.9001.zip(r-4.6-x86_64)mssrscopR_0.2.0.9001.zip(r-4.6-arm64)mssrscopR_0.2.0.9001.zip(r-4.5-x86_64)
mssrscopR_0.2.0.9001.tgz(r-4.6-x86_64)mssrscopR_0.2.0.9001.tgz(r-4.6-arm64)mssrscopR_0.2.0.9001.tgz(r-4.5-x86_64)mssrscopR_0.2.0.9001.tgz(r-4.5-arm64)
mssrscopR_0.2.0.9001.tar.gz(r-4.7-arm64)mssrscopR_0.2.0.9001.tar.gz(r-4.7-x86_64)mssrscopR_0.2.0.9001.tar.gz(r-4.6-arm64)mssrscopR_0.2.0.9001.tar.gz(r-4.6-x86_64)
mssrscopR_0.2.0.9001.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
mssrscopR/json (API)

# Install 'mssrscopR' in R:
install.packages('mssrscopR', repos = c('https://cttir.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cttir/mssrscopr/issues

Pkgdown/docs site:https://cttir.github.io

On CRAN:

Conda:

microscopyimage-processingmean-shifttemporal-statisticsstructural-maps

3.65 score 13 exports 3 dependencies

Last updated from:2758f72ccc. Checks:13 OK, 2 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK167
linux-devel-x86_64OK177
source / vignettesOK256
linux-release-arm64OK158
linux-release-x86_64OK174
macos-release-arm64OK157
macos-release-x86_64OK285
macos-oldrel-arm64OK132
macos-oldrel-x86_64OK246
windows-devel-arm64ERROR294
windows-devel-x86_64OK202
windows-release-arm64ERROR290
windows-release-x86_64OK184
windows-oldrel-x86_64OK167
wasm-releaseOK107

Exports:mssrmssr_appmssr_batchmssr_coordsmssr_estimate_resourcesmssr_maskmssr_read_resultmssr_selftestmssr_settingsmssr_stackmssr_temporalmssr_validate_resultmssr_write_result

Dependencies:clirlangwithr

Single-frame MSSR with mssrscopR
The operator | Known failure modes | Several channels or bands | Masks with measurements on the original data | Degenerate input and unsupported requests | Interactive exploration | Checking an installation | Reproducible expert workflow | Save and replay an analysis
Rendered frommssrscopR.Rmdusingknitr::rmarkdown

Last update: 2026-11-03
Started: 2026-10-20

Temporal statistics of MSSR maps
A synthetic sequence | Definitions | Reading the outputs | Relation to the authors' tools | Memory and time
Rendered fromtemporal.Rmdusingknitr::rmarkdown

Last update: 2026-11-03
Started: 2026-10-29

Method concordance
Rendered frommethod-concordance.Rmdusingknitr::rmarkdown

Last update: 2026-10-28
Started: 2026-10-26